Research Progress on the Application of Cytochrome P450 Gene Polymorphisms in Toxicological Analysis
CHENG Zhongping1,2, JIA Zelei3, XU Xingmin1, MO Yaonan1
1. College of Basic Medicine and Forensic Medicine, Henan University of Science and Technology,
Luoyang 471023, China; 2. Henan Shengde Judicial Expertise Center, Xinyang 464000, China;
3. The Forensic Center of Henan University, Kaifeng 475000, China
CHENG Zhongping, JIA Zelei, XU Xingmin, MO Yaonan. Research Progress on the Application of Cytochrome P450 Gene Polymorphisms in Toxicological Analysis[J]. Chinese Journal of Forensic Sciences, 2025(4): 55-62.
[ 1 ]ZHAO M Z,MA J S,LI M,et al. Cytochrome P450 enzymes and drug metabolism in humans[J]. International Journal of Molecular Sciences,2021,22(23):12808.
[ 2 ]DAVID R. The promise of toxicogenomics for genetic toxicology:Past,present and future[J]. Mutagenesis,2020,35(2):153-159.
[ 3 ]沈敏,严慧,施妍,等. 系统毒理学——法医毒物学发展的机遇与挑战[J]. 中国司法鉴定,2016(5):57-65.
[ 4 ]CHOWDHURY H A,BHATTACHARYYA D K,KALITA J K. (Differential)co-expression analysis of gene expression:A survey of best practices[J]. IEEE/ACM Transactions on Computational Biology and Bioinformatics,2020,17(4):1154-1173.
[ 5 ]SYVÄNEN A C. From early methods for DNA diagnostics to genomes and epigenomes at high resolution during four decades—a personal perspective[J]. Upsala Journal of Medical Sciences,2024,129:129.
[ 6 ]FUERST R,BREINBAUER R. Activity-based protein profiling (ABPP) of oxidoreductases[J]. ChemBioChem,2021,22(4):630-638.
[ 7 ]ZANGER U M,TURPEINEN M,KLEIN K,et al. Functional pharmacogenetics/genomics of human cytochromes P450 involved in drug biotransformation[J]. Analytical and Bioanalytical Chemistry,2008,392(6):1093-1108.
[ 8 ]PIRAIANU A I,FULGA A,MUSAT C L,et al. Enhancing the evidence with algorithms:How artificial intelligence is transforming forensic medicine[J]. Diagnostics (Basel),2023,13(18):2992.
[ 9 ]HICKS J K,SWEN J J,GAEDIGK A. Challenges in CYP2D6 phenotype assignment from genotype data:A critical assessment and call for standardization[J]. Current Drug Metabolism,2014,15(2):218-232.
[10]DORJI P W,TSHERING G,NA-BANGCHANG K. CYP2C9,CYP2C19,CYP2D6 and CYP3A5 polymorphisms in South-East and East Asian populations:A systematic review[J]. Journal of Clinical Pharmacy and Therapeutics,2019,44(4):508-524.
[11]MANIKANDAN P,NAGINI S. Cytochrome P450 structure,function and clinical significance:A review[J]. Current Drug Targets,2018,19(1):38-54.
[12]钱建畅. 中国汉族人群细胞色素P4502D6(CYP2D6)基因多态性研究[D]. 温州:温州医科大学,2012.
[13]施妍. 法医毒理学中药物代谢与中国汉族人群CYP基因多态性的关联分析[D]. 上海:复旦大学,2013.
[14]United Nations Office on Drugs and Crime. World drug report 2024[R/OL].[2025-02-06].https://www.unodc.org/unodc/en/data-and-analysis/world-drug-report-2024.
[15]GASSE A,VENNEMANN M,KÖHLER H,et al. Toxicogenetic analysis of Δ9-THC-metabolizing enzymes[J]. International Journal of Legal Medicine,2020,134(6):2095-2103.
[16]WOLOWICH W R,GREIF R,KLEINE-BRUEGGENEY M,et al. Minimal physiologically based pharmacokinetic model of intravenously and orally administered delta-9-tetrahydrocannabinol in healthy volunteers[J]. European Journal of Drug Metabolism and Pharmacokinetics,2019,44(5):691-711.
[17]VEVELSTAD M,ØIESTAD E L,NEREM E,et al. Studies on para-methoxymethamphetamine (PMMA) metabolite pattern and influence of CYP2D6 genetics in human liver microsomes and authentic samples from fatal PMMA intoxications[J]. Drug Metabolism and Disposition,2017,45(12):1326-1335.
[18]CISZKOWSKI C,MADADI P,PHILLIPS M S,et al. Codeine,ultrarapid-metabolism genotype,and postoperative death[J]. New England Journal of Medicine,2009,361(8):827-828.
[19]KOREN G,CAIRNS J,CHITAYAT D,et al. Pharmacogenetics of morphine poisoning in a breastfed neonate of a codeine-prescribed mother[J]. Lancet,2006,368(9536):704.
[20]WU A H B,KEARNEY T. Lack of impairment due to confirmed codeine use prior to a motor vehicle accident:Role of pharmacogenomics[J]. Journal of Forensic and Legal Medicine,2013,20(8):1024-1027.
[21]GLOOR Y,LLORET-LINARES C,BOSILKOVSKA M,et al. Drug metabolic enzyme genotype-phenotype discrepancy:High phenoconversion rate in patients treated with antidepressants[J]. Biomedicine & Pharmacotherapy,2022,152:113202.
[22]NEUKAMM M A,VOGT S,HERMANNS-CLAUSEN M,et al. Fatal doxepin intoxication—Suicide or slow gradual intoxication?[J]. Forensic Science International,2013,227(1/2/3):82-84.
[23]PELLETTI G,LEONE O,GAVELLI S,et al. Sudden unexpected death after a mild trauma:The complex forensic interpretation of cardiac and genetic findings[J]. Forensic Science International,2021,328:111004.
[24]FOTI F,DE-GIORGIO F,VETRUGNO G,et al. A de novo ryanodine receptor 2 gene variant in a case of sudden cardiac death[J]. International Journal of Legal Medicine,2020,134(2):619-623.
[25]JORNIL J,NIELSEN T S,ROSENDAL I,et al. A poor metabolizer of both CYP2C19 and CYP2D6 identified by mechanistic pharmacokinetic simulation in a fatal drug poisoning case involving venlafaxine[J]. Forensic Science International,2013,226(1/2/3):e26-31.
[26]RAMÍREZ-SANTANA M,ZÚÑIGA-VENEGAS L,CORRAL S,et al. Reduced neurobehavioral functioning in agricultural workers and rural inhabitants exposed to pesticides in northern Chile and its association with blood biomarkers inhibition[J]. Environmental Health,2020,19(1):84.
[27]SINGH S,KUMAR V,VASHISHT K,et al. Role of genetic polymorphisms of CYP1A1,CYP3A5,CYP2C9,CYP2D6,and PON1 in the modulation of DNA damage in workers occupationally exposed to organophosphate pesticides[J]. Toxicology and Applied Pharmacology,2011,257(1):84-92.
[28]CHEN L,QIAN Y Z,JIA Q,et al. A national-scale distribution of organochlorine pesticides (OCPs) in cropland soils and major types of food crops in China:Co-occurrence and associated risks[J]. Science of the Total Environment,2023,861:160637.
[29]GARSHIN A,ALTYNOVA N,DJANGALINA E,et al. Individual risk assessment for population living on the territories long-term polluted by organochlorine pesticides[J]. Toxics,2023,11(6):482.
[30]DE OLIVEIRA A F B,DE SOUZA M R,BENEDETTI D,et al. Investigation of pesticide exposure by genotoxicological,biochemical,genetic polymorphic and in silico analysis[J]. Ecotoxicology and Environmental Safety,2019,179:135-142.
[31]BI Q F,GOODMAN K E,KAMINSKY J,et al. What is machine learning? a primer for the epidemiologist[J]. American Journal of Epidemiology,2019,188(12):2222-2239.
[32]GUPTA R,SRIVASTAVA D,SAHU M,et al. Artificial intelligence to deep learning:Machine intelligence approach for drug discovery[J]. Molecular Diversity,2021,25(3):1315-1360.
[33]MAS S,GASSÓ P,TORRA M,et al. Intuitive pharmacogenetic dosing of risperidone according to CYP2D6 phenotype extrapolated from genotype in a cohort of first episode psychosis patients[J]. European Neuropsychopharmacology,2017,27(7):647-656.
[34]WENDT F R,NOVROSKI N M M,RAHIKAINEN A L,et al. A pathway-driven predictive model of tramadol pharmacogenetics[J]. European Journal of Human Genetics,2019,27(7):1143-1156.
[35]WENDT F R,NOVROSKI N M M,RAHIKAINEN A L,et al. Supervised classification of CYP2D6 genotype and metabolizer phenotype with postmortem tramadol-exposed finns[J]. The American Journal of Forensic Medicine and Pathology,2019,40(1):8-18.
[36]SINGH A V,CHANDRASEKAR V,PAUDEL N,et al. Integrative toxicogenomics:Advancing precision medicine and toxicology through artificial intelligence and OMICs technology[J]. Biomedicine & Pharmacotherapy,2023,163:114784.
[37]O’DONOVAN S D,CAVILL R,WIMMENAUER F,et al. Application of transfer learning to predict drug-induced human in vivo gene expression changes using rat in vitro and in vivo data[J]. PLoS One,2023,18(11):e0292030.
[38]STOYANOVA R,KATZBERGER P M,KOMISSAROV L,et al. Computational predictions of nonclinical pharmacokinetics at the drug design stage[J]. Journal of Chemical Information and Modeling,2023,63(2):442-458.
[39]O’DONOVAN S D,DRIESSENS K,LOPATTA D,et al. Use of deep learning methods to translate drug-induced gene expression changes from rat to human primary hepatocytes[J]. PLoS One,2020,11,15(8):e0236392.
[40]DI NUNNO N,ESPOSITO M,ARGO A,et al. Pharmacogenetics and forensic toxicology:A new step towards a multidisciplinary approach[J]. Toxics,2021,9(11):292.